SE3130317

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10914
  • Fragaria vesca
  • SE3130317
  • hAT
  • Frvh41
  • LG3:378831-379091
  • ATTATACG
  • TATACGCAAGGAGTAAAATATC

Secondary structure and sequence

TSD    TIR
5'



3' 
AT    CG                GAT      G  AATTTCGATGGTTCGAAAAAAGGAAATCTCGATGGATATATCGAGATAATATCGAATATCGATAGAAATTTTACCAAATTTTATCTAAAAGTTGTA
  TATA  CAAGGAGTAAAATATC   GATCAT GA                                                                                                
  ||||  ||||||||||||||||   |||||| ||                                                                                                 
  ATAT  GTTCCTCATTTTATAG   TTTTAT AG                                                                                                
GC    TA                --A      -  GAGCTATAAAGAAATTTTAAAAACAAAAAATGTTAATAACTATAATTAAAAATATATAAAGGCTCTAATATATAAATCAGATAAAAAACAGCTTAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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