Plant MITE

SE3120318

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10915
Fragaria vesca
SE3120318
Mutator
FrvM2
LG7:570042-570278
TGTAAGTTT
AATTATTCTCTGTACCCGGAACACCATGTG

Secondary structure and sequence

TSD TIR

5'

3'

TGTAAGTTTGAGT       CTC                 G  ------GCA   -----  A --  -  --  TACCCGGCCAATCATATAACTCAGATTCATGTGGGGACCAGCACGGGGTGGA
             AATTATT   TGTACCCGGAACACCAT TG         CTG     CC T  GT GT  TG                                                    
             |||||||   ||||||||||||||||| ||         |||     || |  || ||  ||                                                     
             TTAATAA   ACATGGGCCTTGTGGTG AC         GGT     TA G  TA TC  GT                                                    
TTTGAATGTCCCT       TAA                 G  AAAATACAA   AAAAT  - AG  A  AG  GCACAAAACAGGAATAAAGGCTAACCACATAAATTAATAAAAAGGAAAAAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3120318

TGTAAGTTTGAGTAATTATTCTCTGTACCCGGAACACCATGTGGCACTGCCATGTGTTGTACCCGGCCAATCATATAACTCAGATTCATGTGGGGACCAGCACGGGGTGGAAAAAAAAGGAAAAATAATTAAATACACCAATCGGAAATAAGGACAAAACACGTGGACTAATGAGATTAAAATGGAACATAAAACAGGTGGTGTTCCGGGTACAAATAATAATTTCCCTGTAAGTTT

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