SE3130321

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10918
  • Fragaria vesca
  • SE3130321
  • hAT
  • Frvh28
  • LG2:4441232-4441933
  • ATTCCAAC
  • TAGGGGTGGACT

Secondary structure and sequence

TSD    TIR
5'



3' 
ATTCCAAC               T  CAACGGTTCGGTTTTTAGGCACTAACCGAAAACCGAAACCGAAGCTTCGGTTTTCTATTTTCTAGAACCGAAACCGATAAAAATATGTAAAAAACCGCACTTGTCGGTTAACCGAACATCGGTTCGGTTTCAATGCGGTTTCGGTTACAAAACCTACTATCCGTAATATTTTTCGCATTTAACCAAATAACATAAAAACTAAAAATATCAAAGTTGTAAACTATTAACACTTCAAATAAGTTACTCTAATGGGTTCAAACAAGTAATTGAAATGAAAAGAAAAGCTAAAGTTTATACATAATTCATTTGAAGCGTCCAACATTTA
        TAGGGGTGGACTCGG CC                                                                                                                                                                                                                                                                                                                                     
        ||||||||||||||| ||                                                                                                                                                                                                                                                                                                                                     T
        ATCCCCACCTGAAAA TC                                                                                                                                                                                                                                                                                                                                     
CAACCTTA               -  CGTGGCTTTTTTGGCTTTGGCCAATTTTGACGTGGCTTGGCTGTGGCTCATTGGTTTTGGCTTACTTTGGCTCCGTTAGCCAAGGTGTTTCGGCGTGTTTGGCTCATCACGCCACAGCCAAACGCCAAGGCACGTAGGATTTTTGGCTTATTTGGCTTGGCTTGGCTGTATATAAGTAAATTAATAATTATGCATTAATATATAATGCACAGTACAAGAATAACCAATACTCAATGTTTATTATCCCAAGGTGTGTGTACTAATACAAAAATTCACAAATACAGATTGTATTAAAGGAGAATACATCAGAAGGAAAAACGTTATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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