Plant MITE

SE3130322

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10919
Fragaria vesca
SE3130322
hAT
Frvh9
LG6:34908155-34908934
CTTACACT
CAGTGGCGTAGCCAGA

Secondary structure and sequence

TSD TIR

5'

3'

CTTACACT   T       CCA  AACCACAAGT   -A        -A     AACAATAATGCCACACAAAATAAAAA  --         -- TGAATAATATAAAAACTTATAAATCATTAGAATACTTTGAAAACAAAAGCTAAATAAAATAACAAATCTCTCTAAAGTAATTATAATTGTCCTCGACGATTGCTCATATTTTGAAATTTTAGAGGAGCTTCAGATGAAGTCGACTGTTTTGTTGTTTTTATCTTACGATACTTTTCAAATAAAACTAAAACATCCATAATTACAAAGTTTTAATTATGAAGGTTGTCAACGACAGGGAAAAATTTATTGAAGGATAACAAAAGAAATACTTAAAGAAGCGACTAAAACTGTTTATATAGAGGTGCACGAGAAATCA
        CAG GGCGTAG   GA          AGA  GGGTCAAG  GTTTA                          TA  TAATTTTTA  T                                                                                                                                                                                                                                                                                                                            
        ||| |||||||   ||          |||  ||||||||  |||||                          ||  |||||||||  |                                                                                                                                                                                                                                                                                                                             
        GTC CCGCATC   CT          TCT  CCCAGTTC  CAAGT                          CG  TGAAGAGAG  T                                                                                                                                                                                                                                                                                                                            
TCACATTC   C       --C  ----------   CC        CC     --------------------------  AC         TG AAAAAATAATTCAGTATAACAATAGATTAAACAGTAAACTTTACACTATAACCGTGATAAAACTGGGAAGATTGATTAATTTCTTTTTAAACCGTATATTTTATAATTAATGTTGTTAGTTAAACCTGTCTCCTCACAAATTGAGGAGTGCACACAAACAATGCACACCAAGAAAAGAAAAAAAAAATTATATCCAAAGATTAGGCTTAGTTACTAAATAACGTAGAGGGAAATTATAATGTTAATTTTGTATAAGGATCAGAAGAAAAAAAACAGAAAATTAATTATACAAAGGATTAGTTAGTTAATAACACTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3130322

CTTACACTCAGTGGCGTAGCCAGAAACCACAAGTAGAAGGGTCAAGAGTTTAAACAATAATGCCACACAAAATAAAAATATAATTTTTATTGAATAATATAAAAACTTATAAATCATTAGAATACTTTGAAAACAAAAGCTAAATAAAATAACAAATCTCTCTAAAGTAATTATAATTGTCCTCGACGATTGCTCATATTTTGAAATTTTAGAGGAGCTTCAGATGAAGTCGACTGTTTTGTTGTTTTTATCTTACGATACTTTTCAAATAAAACTAAAACATCCATAATTACAAAGTTTTAATTATGAAGGTTGTCAACGACAGGGAAAAATTTATTGAAGGATAACAAAAGAAATACTTAAAGAAGCGACTAAAACTGTTTATATAGAGGTGCACGAGAAATCAATCACAATAATTGATTGATTAGGAAACATATTAATTAAAAGACAAAAAAAAGAAGACTAGGAATATGTTTTAATTGTAATATTAAAGGGAGATGCAATAAATCATTGATTCGGATTAGAAACCTATATTAAAAAAAAAAGAAAAGAACCACACGTAACAAACACACGTGAGGAGTTAAACACTCCTCTGTCCAAATTGATTGTTGTAATTAATATTTTATATGCCAAATTTTTCTTTAATTAGTTAGAAGGGTCAAAATAGTGCCAATATCACATTTCAAATGACAAATTAGATAACAATATGACTTAATAAAAAATGTGAGAGAAGTCAGCTGAACCCCTTGACCCCCTCTTCCCTACGCCCCTGCTTACACT

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