SE3150323

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10920
  • Fragaria vesca
  • SE3150323
  • PIF/harbinger
  • FrvP14
  • LG5:13483788-13484275
  • TAA
  • AGGGCACGTTTACCAACTTAGAATG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA      C      C     A     --------------AAAATTATTA  AATCGGTATCAACAACAATCGGTATGAGAATATTTCATATCATTCTACTGTTTACTTATCATAAGGAATCAAAACATGAATGAAACTAATTACGATTGATGTTGTTTACTTACCATATGGAATCGGAATTAAAACTAGTTTGATTACTAAAATACCCGTAAAATATAATATATATATATATATATATTTTAGGGTTAG
  AGGGCA GTTTAC AACTT GAATG                        TG                                                                                                                                                                                                      
  |||||| |||||| ||||| |||||                        ||                                                                                                                                                                                                       
  TTCCGT CAAATG TTGGA CTTAC                        GG                                                                                                                                                                                                      
AA      A      A     C     CTTAACTCTCACCACATTAACTAA  CCTTACCCACTTAAAGCCGCAAATGATTGTACAGTTCCATAAACTTACCTACACCCAGGGTGAACGAATAGTCCTTAGCTGAGAACTACTTTGGGGAATAAACTATGGGTTCCCCCCTCTACTTATAGTCTTAGTTCCATTACTTTAGTTGAAAAAGAAGGATTTTATTGAAGTGTATTAATATTATAAGATTTAATG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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