Plant MITE

SE3150325

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10922
Fragaria vesca
SE3150325
PIF/harbinger
FrvP7
LG3:8400975-8401364
TTA
AGAGCATCTTTAACA

Secondary structure and sequence

TSD TIR

5'

3'

TT            A  ATG     C   ---   TAGTCAAATTTTAACCAAAATAACTAAAAAGTCATTTTAGCTAGCCATTTTATAAATACCTCTACATCGGTACTCTCTTTTCTAACTAAAGTTTGATTTATATTATTGATTAAATAAAGAAAAATTAATTTAAATGTTTTTTAATATTACATAAAATGGTTTA
  AGAGCATCTTTA CA   TTAGT ATT   TTG                                                                                                                                                                   
  |||||||||||| ||   ||||| |||   |||                                                                                                                                                                    
  TCTCGTAGAAAT GT   TGAGA GAT   ACT                                                                                                                                                                   
AT            C  --C     -   ATA   GAGGACTCGGTAAAATCTCTCGCTAAAATCAAAAAATAGTTGAAATGGTCGAGGTCGTCTAATTGTTCACCGATCAATAAAATTGAAAATCAATAGAGCAATCGATTTATATCGATCGCTCTACTCTGAGAGATATTAAATACAATTAAATTACATAAGTAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3150325

TTAGAGCATCTTTAACAATGTTAGTCATTTTGTAGTCAAATTTTAACCAAAATAACTAAAAAGTCATTTTAGCTAGCCATTTTATAAATACCTCTACATCGGTACTCTCTTTTCTAACTAAAGTTTGATTTATATTATTGATTAAATAAAGAAAAATTAATTTAAATGTTTTTTAATATTACATAAAATGGTTTAAAATGAATACATTAAATTAACATAAATTATAGAGAGTCTCATCTCGCTAGCTATATTTAGCTAACGAGATAACTAAAAGTTAAAATAACTAGCCACTTGTTAATCTGCTGGAGCTGGTAAAGTTGATAAAAAACTAAAATCGCTCTCTAAAATGGCTCAGGAGTCAATATAGAGAGTCTGCTAAAGATGCTCTTA

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