SE3150327

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10924
  • Fragaria vesca
  • SE3150327
  • PIF/harbinger
  • FrvP25
  • LG4:13986212-13986601
  • TAA
  • AGGGCATCTCCAACTATTGGTCTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   G         CTA        TAACCCAAA      TTCAAATTTTAGGCCAACCAAACCTAAAAATATTCATATGAGTTTTGCATCTCTAACCGATGAAGTCAAGACTCAAACCTATTTTGATTTTTATATCATTGTTCAATCTTAAATGGAGTCAAACCTACACATATTTTAATCATTAATTGTTTTATATT
  AGG CATCTCCAA   TTGGTCTA         CCTAAA                                                                                                                                                              
  ||| |||||||||   ||||||||         ||||||                                                                                                                                                              A
  TCT GTAGAGGTT   AACCAGAT         TTTGGA                                                                                                                                                              
AA   G         AGG        ---------      TATTATCCAAACCCAAAACACTTTAAATTAGAAGTTGGGTGATAGGTTCAACTCGATTTTATCCTAAATGGATTTAACACAGGATAAAAGTGAGTTGGTTTATCTTGATTTTGGATATTAATTACTCACTCACCCACACCCAATCACAATATCAAATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3