SE3130328

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10925
  • Fragaria vesca
  • SE3130328
  • hAT
  • Frvh14
  • LG3:25242927-25243523
  • CTTTTTAC
  • CAGGGGCGGATCTAG

Secondary structure and sequence

TSD    TIR
5'



3' 
CTTTTTAC                    --  CACCA  GGACTCAAGTCCCACCCAAATATTTTGGGGAAAAAAATTACTACTTATAGTTATCATTAGTTTTATGGTGTGATTGTAAGATTGTTGAGCTTAAGTCCCACTCAAATTCCTTCATCTTGTACAATTACTAATCAAATATTTTTTGGGATAGTCTCACTCAAGTCCTAGCTAGCATTGACGTGATCCAAGTGTCTATCGTATATTTAATTTCATTTTTGTTAAAGAAAGAGATAAGGTTCTCTATCTTCTCAAAAAAGATAAAC
        CAGGGGCGGATCTAGGTACA  AG     TG                                                                                                                                                                                                                                                                       
        ||||||||||||||||||||  ||     ||                                                                                                                                                                                                                                                                        
        GTCCCCGCCTAGGTCTTTAG  TT     AG                                                                                                                                                                                                                                                                       
CATTTTTC                    CG  -----  CCCACCCTGAACCTAAAAATCATCCTTTAAAAAAAACTGCCACAATCTCTTTAAATATCTAACTTTTATTTCTATTTGGATCAGTATTTCCTGCATCACCCGGAAATGGTGAGGTTACAAACAAATTAAGTATTTTGTGAAATCTGTATTGTTTTTTTTTTTGATTTATTCGTAAAGTTATTCTGGCTGTTGGAGCGCAGGAGTGGCTACGACGCACTGTTCCCATACCGTTCCTTCTTTTCTTTTGTTGTCTGTTGTATCTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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