SE3130335

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10932
  • Fragaria vesca
  • SE3130335
  • hAT
  • Frvh44
  • LG7:13250903-13251089
  • ATTTGAAA
  • TTTGAAAGGGATGTGAAATCCACACACCTCAAATTGAAATTTACACACCATTTTTTCTTTTTGGTAAC

Secondary structure and sequence

TSD    TIR
5'



3' 
A      A   A        C                           CC             -   -   TTAAAT     CTTTT     CTTAA
 TTTGAA GGG TGTGAAAT CACACACCTCAAATTGAAATTTACACA  ATTTTTTCTTTTT GGT AAC      TTTAT     AATGA     
 |||||| ||| |||||||| |||||||||||||||||||||||||||  ||||||||||||| ||| |||      |||||     |||||     A
 AAGTTT CCC ACACTTTA GTGTGTGGGGTTTAACTTTAGGTGTGT  TAAAAAGGAAAAA CCA TTG      AAGTG     TTACT     
A      A   A        A                           AA             A   A   ---TGT     ---TT     ATTTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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