SE3130340

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10937
  • Fragaria vesca
  • SE3130340
  • hAT
  • Frvh18
  • LG6:28377226-28377657
  • ATTTTGGT
  • GGTCAATGTTCTAAAAAAC

Secondary structure and sequence

TSD    TIR
5'



3' 
ATTTT                   G    -    --   T G   GGACAGCCGGCACCTAGTGCCTAGAGGATTAATCGGACGCCTAGGCGGTTTTGTATTTTCCGTATTTTTATTTTTTTAATAGCAAATAAAATATAAAAATAAATTTATAAAATGCATTATAATGTTCTAAAATAGCAAATATACATCAAAAATAAATAAAATGGTCAACTTCTA
     GGTCAATGTTCTAAAAAAC CTAG GCGC  TAG C GGC                                                                                                                                                                              
     ||||||||||||||||||| |||| ||||  ||| | |||                                                                                                                                                                               
     TTAGTTACAAGATTTTTTG CGGC GGTC  GGC G GAT                                                                                                                                                                              
TGGTT                   -    A    CC   - -   CCGCGATCCGCAGTCGGGTGGCAAGGCTAAAGGGTGATTAGCAAGTTAGACCCACGATCGCGCTTTTGCCGGCGGATCCGCTCGACCCGCCGGTATAATCAAAAAAAAAAACTTAGTTTTGTGTAATTTCGGATTAAACAAATAAAGTTTAATAAAAACAATAAAGATTCTTGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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