SE3150344

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10941
  • Fragaria vesca
  • SE3150344
  • PIF/harbinger
  • FrvP29
  • LG1:10150963-10151307
  • TTA
  • AGTGCACATTTGGTATTTAGGGATTATATTTGATT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT      CA    GTA    -       T  TT          TTTTTAAAGATTAGTTTGTATTTATATATGGTGTCTTAAATTATATTAATATTAACCCAAATTTGGTGTTGCATGAAATTAGAGAGTAATTTGTTTGATTTATAGTTTAGAATAATGGTGTTATCTAAGG
  AGTGCA  TTTG   TTTA GGGATTA AT  GATTTCTTTA                                                                                                                                  
  ||||||  ||||   |||| ||||||| ||  ||||||||||                                                                                                                                   
  TCACGT  AAAC   AAGT CTCTGAT TA  CTGACACGAT                                                                                                                                  
AT      AC    --A    A       T  CT          TTATTCCTCAGGTTAAATCAATCATGATACAAACTACAATAATCCATGATTTTATTTACTCGAATGCATTGTGGAACAAAAGTAAAACCGGAGAAATCTGCCACAATAATATCCATGAATTTATCCAGTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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