SE3120345

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10942
  • Fragaria vesca
  • SE3120345
  • Mutator
  • FrvM23
  • LG5:12540861-12541313
  • TAAACCCAA
  • AGGC

Secondary structure and sequence

TSD    TIR
5'



3'
TAAACCCA    ATAATT     T           ATCCTAAC                                                       C        C                     ----------A   CA    A            G C           A C     A  T   -------------AAAATT  AATATCGACCAACTTTAACCTTCAATTTTT
        AGGC      GCCAA TTGCTACCATA        TTTCATCTTGGTGTTAATTTGCTACTTTAGCTTTTATTTCAGCCAATTTGCTACT TAGTTTTT ATAATTAGCCAATTTGCTACC           TTC  TCAA TTTGCTACTTTA G TTTCAAGATTA C AATTT CT ATC                   TC                              
        ||||      ||||| |||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||           |||  |||| |||||||||||| | ||||||||||| | ||||| || |||                   ||                               
        TCCG      CGGTT AACGATGGTAT        AAAGTGGAATCACAGTTAAATGATGGAATTGAAAGTAAAGTCGGTTAAACGATGG ATTAAAAA TATTAATCGGTTAAACGATGG           AAG  GGTT AAACGATGGAAT C AAAGTTTTAAT G TTGAA GA TGG                   AA                              
AACCCAAA    CAAAAT     T           ------GT                                                       A        A                     GATTGATAATA   AC    -            A A           C A     C  -   AAAAACAGTAAAATAAAAC  GTAAAGAAGTATGTTTGTACTTAAATAAGC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End