Plant MITE

SE3120349

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10946
Fragaria vesca
SE3120349
Mutator
FrvM1
LG6:26381119-26381325
ATTAATTAT
TAATTATGGGGAGTGAAATTTACATACCCATTTTTATAATCCACACACCTATGCCCCACTTTTTATAAGGAAATGTATAAATTATCCATGTTTTAATC

Secondary structure and sequence

TSD TIR

5'

3'

AT      T    AG                A                 CC    C C                    A    T     A       AT TCTTC
  TAATTA GGGG  TGAAATTTACATACCC TTTTTATAATCCACACA  TATG C CACTTTTTATAAGGAAATGT TAAA TATCC TGTTTTA  C     
  |||||| ||||  |||||||||||||||| |||||||||||||||||  |||| | |||||||||||||||||||| |||| ||||| |||||||  |      
  ATTAAT CCCC  ACTTTAAATGTGTGGG AAAAATGTTAGGTGTGT  ATAC G GTGAAAAATATTCTTTTACA ATTT ATAGG ATAGGAT  G     
 T      T    CG                G                 --    A A                    G    T     G       CT TTGAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3120349

ATTAATTATGGGGAGTGAAATTTACATACCCATTTTTATAATCCACACACCTATGCCCCACTTTTTATAAGGAAATGTATAAATTATCCATGTTTTAATCTCTTCAAGTTGTCTAGGATAGGGATATTTTAGACATTTTCTTATAAAAAGTGAGACATATGTGTGGATTGTAAAAAGGGGTGTGTAAATTTCAGCCCCCTTAATTAT

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