SE3150350

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10947
  • Fragaria vesca
  • SE3150350
  • PIF/harbinger
  • FrvP4
  • LG7:12239067-12239535
  • TTG
  • GGGCCTCGTTTGGTTGATGGAAAGGAAATTGGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT               G     AA     TT    CCTTGGT      CATGTACATGGGAAAGTAAATTTCCCTCTAGTTTCCCTACGAGATGTTTGGGAACGTCGGGAAAGTAACTAGGAAATGTATTTTACTTTCCTTTTTAATGTTTGGTTTATGCATGGATAGGAAAGCAAGTAACATTGATTTACCAATTATATCCTTAGTAATAAAATATATAATATTTAAGATTCTG
  GGGCCTCGTTTGGTT ATGGA  GGAAA  GGTT       CTTTCC                                                                                                                                                                                           
  ||||||||||||||| |||||  |||||  ||||       ||||||                                                                                                                                                                                            
  TCCGGAGCAAACCAA TACCT  TCTTT  CCAA       CCTTTC                                                                                                                                                                                           
GT               G     AA     --    -CTCTTC      AACAAGGAAAGGAAACAAACCGTGTGTATTCCTTTCCTTTCTGAAATGACGTTATACCCTTTTATCTACCCTTTAACCTAGGAGGGTGTATGGTACCCTAAGTTAAAGGGAGTATGAAAGGGTTGTAATTAACGTAGAAAATATATAACAAAATTACCTACAATAATGGTTTAATAGGTGTTTTGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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