SE3120352

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10949
  • Fragaria vesca
  • SE3120352
  • Mutator
  • FrvM11
  • LG7:2083706-2084188
  • TATACAAAA
  • AGAACTAATTTCAGTTTACCCCATCAATTTAGGTCGATTATTATGTTAGTCATTCTTCTTTCAATTTCATCAAAAACACCCCTCGACTCCCAATTTTCATCAGCTACGCATGTCCAAACCTCCAATCTTCATCCAATTCCTTTGTCAAGTGATGACTTGATATCAAGAAAAA

Secondary structure and sequence

TSD    TIR
5'



3'
TATACAAA  A                   -        -                     A  C      C        C          CTC      C              A                           C     C               C                AAAT  A      ------GCA   AA ---   ATCAAAATCACTAAGGTTAGGAGGTTGCGATGAG
        AG ACTAATTTCAGTTTACCCC ATCAATTT AGGTCGATTATTATGTTAGTC TT TTCTTT AATTTCAT AAAAACACCC   GACTCC AATTTTCATCAGCT CGCATGTCCAAACCTCCAATCTTCATC AATTC TTTGTCAAGTGATGA TTGATATCAAGAAAAA    AG CAAATT         TTC  T   CTC                                  
        || ||||||||||||||||||| |||||||| ||||||||||||||||||||| || |||||| |||||||| ||||||||||   |||||| |||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||    || ||||||         |||  |   |||                                   
        TC TGATTAAAGTCAAATGGGG TAGTTGAA TTCAGCTAGTAGTACAATCAG AA AAGAAA TTAAAGTA TTTTTGTGGG   TTGAGG TTAAAAGTAGTCGG GCGTACAGGTTTGGAGGTTAGAGGTAG TTAAG AGACAGTTCACTACT AACTATAGTTCTTTTT    TC GTTTAA         TGT  A   CCT                                  
AAAACATA  C                   G        A                     A  T      A        A          AAC      A              C                           T     A               A                ----  A      GATTTTCAA   -- AAG   GGTAAAAAGGGGGTATAGCTATGGGTAGAAGCAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End