Plant MITE

SE3120353

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10950
Fragaria vesca
SE3120353
Mutator
FrvM4
LG1:219694-219849
AAAACATTA
GGATT

Secondary structure and sequence

TSD TIR

5'

3'

AAAACATTA     CGGC         C  T       C   C  C   A               C    AACAATTT
         GGATT    TGTTATACA AT TGTATGA ATA AT AAG TGTGAGCCGTCTGAT GTTT        
         |||||    ||||||||| || ||||||| ||| || ||| ||||||||||||||| ||||         
         CCTGA    ACGATATGT TA ACATATT TAT TA TTC GCACTCGGCAGGCTA CAGA        
GTTACAAAA     AAAA         A  C       A   A  A   C               A    ACTTAAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3120353

AAAACATTAGGATTCGGCTGTTATACACATTTGTATGACATACATCAAGATGTGAGCCGTCTGATCGTTTAACAATTTAAAATTCAAGACAATCGGACGGCTCACGCCTTAATATATATTATACACATATGTATAGCAAAAAAGTCCAAAACATTG

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