SE3120356

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10953
  • Fragaria vesca
  • SE3120356
  • Mutator
  • FrvM12
  • LG7:10154496-10154892
  • AAATCTAAG
  • GGGTAAGGCTAGGGTGTGTTAATGCATGTGATGCATCAATTTTGT

Secondary structure and sequence

TSD    TIR
5'



3'
AAATCTAAG   T  GGC  G                   ---------  C           CCTCAAGTTAT   A      A     G            T    -------A       T        CTG      AAAA            T     T    T            T    CAACTTTTTTTTAATCAC       ACTCAA
         GGG AA   TA GGTGTGTTAATGCATGTGA         TG ATCAATTTTGT           AAA TGAGTC TCAAA TAGTAATATTAG CCTC        AATATGA TCCTTAAA   GTAAAA    TTAGTTACAACA TAGTC TCAT TGTCCTTAAAGT GTAA                  TTTAAGG      
         ||| ||   || |||||||||||||||||||         || |||||||||||           ||| |||||| ||||| |||||||||||| ||||        ||||||| ||||||||   ||||||    |||||||||||| ||||| |||| |||||||||||| ||||                  |||||||       
         CCT TT   AT TTACACAATTACGTACACT         AC TAGTTGAAACA           TTT ACTCAG AGTTT ATCATTATAATC GGAG        TTATACT AGGAATTT   CATTTT    GATCAATGTTGT ATCAG AGTA ACAGGAATTTTA CATT                  GAATTTC      
GAATCTAAA   T  AAA  G                   TACTACACT  A           -----------   A      G     G            T    CCTCAACA       C        CAA      AAAA            T     T    C            T    ----------TTACACAC       ACCATT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End