SE3150357

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10954
  • Fragaria vesca
  • SE3150357
  • PIF/harbinger
  • FrvP30
  • LG5:12957106-12957479
  • TTA
  • AGAGCATCTCCAACAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT      T         T    TCAATTTTTTTTTGTCAATTTCAAAATTTGACATGTGAGTTGCCAATGTCATTTTTGACTCATTTCCTCTCTAACAAAAGAGTTAAATTTGACAACTCTTTTATTATTTTCATAATATTATACATATAAAACTATTTCTTAGAGGAAGAAGAGAAAACAACGGG
  AGAGCA CTCCAACAA CATG                                                                                                                                                                    
  |||||| ||||||||| ||||                                                                                                                                                                    G
  TCTCGT GAGGTTGTT TCCT                                                                                                                                                                    
AT      T         -    TAGTTTAGGATCAACCGTCCGGTTGTCGATGAAAACTGGTGGGTTTTTTGAGAGGTTGTTTTATCAGTTAAAGTGCACATTAACTGTTATACCAAATATATCAGTTTAAACTGTGTTGCTTTTACAGTAAGTAATAAAATAGTAAGAAAGAGAGAGAAGAGAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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