Plant MITE

SE3120358

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10955
Fragaria vesca
SE3120358
Mutator
FrvM52
unanchored:2111787-2112025
AACTAATAA
GACTTCGGTGATAAGGGCTTGTCACCTTAAGGTGAC

Secondary structure and sequence

TSD TIR

5'

3'

AACTAATAAGAACCC     C      AAG    --T    CC  AA      CACA        ATATG     C     C   ------------     AG -- TTGACTGCAATTTAAGGACAT
               GACTT GGTGAT   GGCT   GTCA  TT  GGTGAC    GCTAATGA     GGACA GTGTC ATA            TTAAA  G  C                     
               ||||| ||||||   ||||   ||||  ||  ||||||    ||||||||     ||||| ||||| |||            |||||  |  |                     A
               TTGAA CCACTG   TCGA   CAGT  AA  CCACTG    TGGTTACT     TTTGT CACAG TGT            TTTGT  A  G                     
AATAATCAACCTTTA     C      --G    TAT    AA  AC      TTTG        CTCTA     T     T   TATTAGTATTTA     -- CA TTTATGGGTTTTAGGGAAACA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3120358

AACTAATAAGAACCCGACTTCGGTGATAAGGGCTTGTCACCTTAAGGTGACCACAGCTAATGAATATGGGACACGTGTCCATATTAAAAGGCTTGACTGCAATTTAAGGACATAACAAAGGGATTTTGGGTATTTGACATGTTTATTTATGATTATTGTTGACACTTGTTTATCTCTCATTGGTGTTTGTCACCCAAAAATGACTATAGCTGGTCACCCAAGTTATTTCCAACTAATAA

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