SE3130359

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10956
  • Fragaria vesca
  • SE3130359
  • hAT
  • Frvh45
  • LG4:26036650-26036795
  • CGTATGTG
  • TATGTGCAGTGGCGGAGT

Secondary structure and sequence

TSD    TIR
5'



3' 
CG       --AGT        CAAACTTTA    - GAGAGAAGTCCATGTGTAAGATGATCACAAGTATGAAGTGAATTAACTAGTTTCAAA
  TATGTGC     GGCGGAGT         GGAT T                                                         
  |||||||     ||||||||         |||| |                                                         T
  GTGTATG     CCGCCTCG         TACG G                                                         
         GATAT        --------A    T TTCGGTTTTCACCGGTACCGTGGGGGGAATTCGAGAAAGGAGATGTACATAAAATAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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