Plant MITE

SE3130363

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10960
Fragaria vesca
SE3130363
hAT
Frvh6
LG4:2005228-2005431
ATTTCTCA
CAGTGGTGTTCACATGATCATCTAGTGACAAAGAAATTCATGGTCAATCATCGTTGGATATAAATCCAAGGGTGGAA

Secondary structure and sequence

TSD TIR

5'

3'

ATTTCTCATA                             A   A  T                  G   A             -    AACAAAACAACTTA
          CAGTGGTGTTCACATGATCATCTAGTGAC AAG AA TCATGGTCAATCATCGTT GAT TAAATCCAAGGGT GGAA              
          ||||||||||||||||||||||||||||| ||| || |||||||||||||||||| ||| ||||||||||||| ||||              A
          GTTATCACAAGTGTATTAGTGGATTACTG TTC TT AGTACCAGTTAGTGGTAA CTA ATTTAGGTTCTCA TCTT              
ATACTCGTTA                             G   C  T                  A   C             A    CATAATAAAATTTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3130363

ATTTCTCATACAGTGGTGTTCACATGATCATCTAGTGACAAAGAAATTCATGGTCAATCATCGTTGGATATAAATCCAAGGGTGGAAAACAAAACAACTTAACTTTAAAATAATACTTCTAACTCTTGGATTTACATCAAATGGTGATTGACCATGATTTCCTTGGTCATTAGGTGATTATGTGAACACTATTGATTGCTCATA

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