SE4140001

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10961
  • Theobroma cacao
  • SE4140001
  • CACTA
  • Ca1
  • Tc09:21815704-21816024
  • GAG
  • CACTACAACAAATTTGA

Secondary structure and sequence

TSD    TIR
5'



3' 
GAG        C   T    CCTAAGAC       -  TTAAAATGTGCTACTAAAATTATTTTTAATAACATTTTTTTTTATATTTTTTAGAACAATTTTGTAAATCTAACCTCACTATATAAATTTTTAGATGCATTATGAATAAAATATAACGATAGAAAT
   CACTACAA AAA TTGA        AGCACAT TT                                                                                                                              
   |||||||| ||| ||||        ||||||| ||                                                                                                                              T
   GTGATGTT TTT AACT        AAAATTA TG                                                                                                                              
GAG        T   T    -------C       G  TGAAAAAATTCGCTGTATAAAAAAACATATCATCTTAAAATTTTTCACATCGATAAATTTGAAAATCGAAGTAAAAAAAGTGTAAATCATCCTTATTTTTTTTTACATTGGAAACCGTCACGTACG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3