SE4120002

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10962
  • Theobroma cacao
  • SE4120002
  • Mutator
  • M1
  • Tc04:16836217-16836677
  • ATCCCAATT
  • TGGCTTAAACCCTAAAAAAGCCCATGTACTATGGCCATTTATTCAACTAAGCCTCTCACTTTTTATTGCATTTAAATAAGCACTTAAACTTTGATTTAGGACCAAA

Secondary structure and sequence

TSD    TIR
5'



3'
ATCCCAAT    T      C     A   C A                                                         ACT   A            A     CAAA       CCC    A         --  ATTGG         TCT   ---C         - C                C    A  C       AC      ACAGCTATGTGGCAA
        TGGC TAAACC TAAAA AGC C TGTACTATGGCCATTTATTCAACTAAGCCTCTCACTTTTTATTGCATTTAAATAAGC   TAA CTTTGATTTAGG CCAAA    CCCTTAA   TAAC GAAATTTAA  GC     TAGACTTAA   GGC    GGCCTTTTT G CCACATGGCATATGAC TGAT AG TGACATG  CACATG               
        |||| |||||| ||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||| |||||||||||| |||||    |||||||   |||| |||||||||  ||     |||||||||   |||    ||||||||| | |||||||||||||||| |||| || |||||||  ||||||                
        ACCG ATTTGG ATTTT TCG G ACATGATACCGGTAAATAAGTTGATTCGGAGAGTGGAAAATAATGTAAGTTTGTTCG   ATT GAAACTAAATTC GGTTT    GGGAATT   ATTG CTTTAAATT  CG     ATCTGGGTT   CCG    CCGGAAAAA C GGTGTACTGTATACTG ACTA TC ACTGTAC  CGTTTT               
TTAACCCT    T      A     C   A A                                                         ATC   C            C     --TC       AAC    C         GA  --GTA         --C   TCAA         A A                A    C  A       -C      TTTTTGACCGTGTAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End