SE4120003

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10963
  • Theobroma cacao
  • SE4120003
  • Mutator
  • M2
  • Tc05:13806494-13806744
  • TTAAACATA
  • AGGAAAATATTTGATGTATTGACAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTAAACAT    -A            A        ATATA        C       TA   A  T        C    --      TTAATGAAGTATTATTTTGAAAGAAATAAAAGTTGATATTAAA
        AGGA  AATATTTGATGT TTGACAAT     TATAGTTT TATATAT  TTA GT ATCAAATT TGAC  ACTTCA                                           
        ||||  |||||||||||| ||||||||     |||||||| |||||||  ||| || |||||||| ||||  ||||||                                           A
        TTCT  TTATAAACTACG AACTGTTA     ATATCAAA ATATGTA  AGT CG TAGTTTAA ATTG  AATAAA                                           
 TACAAAT    AA            C        ----C        A       TC   C  T        A    TG      ACTTTATTTATTTTACAACTATTCCAGAGTTTTGCTGCAATCC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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