SE4120004

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10964
  • Theobroma cacao
  • SE4120004
  • Mutator
  • M3
  • Tc00:76169191-76169730
  • AATTTTTTA
  • GGCATAATGCTCAAA

Secondary structure and sequence

TSD    TIR
5'



3'
AATTTTTTA         CT    TATG   C               T        AA C      T            T         A                  A                -----------T   -  TGATTAACTAATTGTCATTACTAAAAATGCCACTTGTCATTTTATTCCCACATGTTACTAATATAGCATTTATGTGAAGGGTGAAAAATGTCACATAACTTTATTATCATGCTAAATTAGCATGTCATATCAT
         GGCATAATG  CAAA    TCT TGAACTATTTAAGAA ATTCAAAT  G TCTTAT CTTTTATTGCAT CAATCAAGT ATTATATTTTTATTTTGA TCAAATAAACCCTTAT            ACT AA                                                                                                                                     
         |||||||||  ||||    ||| ||||||||||||||| ||||||||  | |||||| |||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||            ||| ||                                                                                                                                      
         CCGTATTAT  GTTT    GGA ATTTGATAGATTCTT TAAGTTTA  C GGAATA GAAAATAACGTA GTTAGTTCA TAATATGAAAATAAAACT GGTTTATTTGGGAATA            CTC GA                                                                                                                                     
ATTTTTTAA         AT    TTTT   A               T        CA A      T            T         G                  C                TAAAAAATAAAA   A  TTATTCGGGAATACTGATTACTAACTGAATTAGTTTTATAGTAAATAATAAGATATAGTGCACTACAACTACATCATATAATTTTATAGTATTAACTAATACTACTACCATAAGACTGTATAGTATTAACTAC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End