SE4150007

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10967
  • Theobroma cacao
  • SE4150007
  • PIF/harbinger
  • To1
  • Tc00:2218872-2219276
  • TAA
  • AGTGCATGTTTGGTTTAGCTTTTTTTCAACTTA

Secondary structure and sequence

TSD    TIR
5'



3'
TA  T  A          A         C      TCTACCTCTTAAAA  AAAAGCCAGGTCAAACATGATTTTTTGAGAAGCTCTTAAAAAAAAAGCAGCTTTTTTTTTAAGAACAAAATTTTTAAAAAAAGAGCTCCAAGGAGGAGCTTTTTCTTCTCTTCTTTTAAAAATATAAGAGAATTTTTATTTTTGTTCCAAAAAT
  AG GC TGTTTGGTTT GCTTTTTTT AACTTA              GC                                                                                                                                                          
  || || |||||||||| ||||||||| ||||||              ||                                                                                                                                                          A
  TC CG ACAAACCGAA TGAAAAAAG TTGAAT              AT                                                                                                                                                          
AA  T  G          C         A      ------TTTCAATA  ACTTCGAGAATTCTTTTTATTATTGAAAATTTTAATTCGATTTCAACAAACCATTTAAAGAAAAATATTCAATATTAAAAACAATTTTAATAGTATCTTCCATAAAGAAAAAAAAACTCTCTCATTATAACATTAATAAAAATTATTTACTCCT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End