SE4120015

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10975
  • Theobroma cacao
  • SE4120015
  • Mutator
  • M3
  • Tc03:13868529-13869067
  • ATTTCATTA
  • GGCATAATGATCAAATAAGCCCCTAAACTATTTAAAAATATTCAAATAAATCTTTATTCTTTTATTACATTCAATCAAGCCGCCGTATTTTTATTTT

Secondary structure and sequence

TSD    TIR
5'



3'
ATTTCATTA         AT    T    C      C       A  T          A       T        A A      C   -  GCC             --TA    -    AGCCCTTATAACTAATGATCTACTAATATTCAATAGTAAAAATACCATTTATCATTTTGTATCCATATGGCACTGACATGAAATTAATATGAAAGATAAAAAATATCACATGATTAAGTTATTATACCAAATTAGCAAGATATGCTATCATT
         GGCATAATG  CAAA AAGC CCTAAA TATTTAA AA ATTCAAATAA TCTTTAT CTTTTATT C TTCAAT AAG CC   GTATTTTTATTTT    AGTT AATA                                                                                                                                                        
         |||||||||  |||| |||| |||||| ||||||| || |||||||||| ||||||| |||||||| | |||||| ||| ||   |||||||||||||    |||| ||||                                                                                                                                                         
         CCGTATTAT  GTTT TTCG GGATTT ATAAATT TT TAAGTTTATT GGGAATA GAAAATAA G AAGTTA TTC GG   TATGAAAATAAAA    GTTT TTTA                                                                                                                                                        
ATTACTTTA         AT    T    A      C       C  T          C       T        C C      A   A  -AA             TTTA    A    GAGATATGTAAAATAAAACTCAGTTTATTTGAGAATAATGATTACTAACTAAATTAGTTTTACAGTAAATAATAAGATATAGAGCACTACGATTACACTTTACGATTATATAATATTAACTAATATTACACCGTACAACTGTATAGTAATAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End