SE4150016

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10976
  • Theobroma cacao
  • SE4150016
  • PIF/harbinger
  • To1
  • Tc10:11655087-11655515
  • TAA
  • AGTGCTTGTTTGGCCTAGCTTTTTTTCAGCTTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA  T             A         C      TTTATCTCTTAAAA  AAAAGCCAGGCCAAACATAAATTTTGAGAAGCTCGTAAAAAAAAATAGCTTTTTTTTTAAAGAATAAAATTTAAAAAAAAAGAGATTTAGGAAAAGCTCTTATGAGGAGCTTTTTCTTCTCTTTTTTTAAAAATACAAGAGAATTTTTATTTTTGTTCCAAAAAT
  AG GCTTGTTTGGCCT GCTTTTTTT AGCTTA              GC                                                                                                                                                                     
  || ||||||||||||| ||||||||| ||||||              ||                                                                                                                                                                      
  TC CGGACAAACCGGG CGAAAAAAG TCGAAT              CT                                                                                                                                                                     
AA  T             C         A      ---CTTCGATAATA  TCGAGAATATTTTTTATTATCGAAAATTTTAATTCGATTTCAACAAACCATTTAAAGAAAAATATTCAAGAAAAAATATTCAATATTAAAAACAATTTTAATAGTATCTTTCATAAAGAAAAACAACTCTCCCATTATAACATTAATAAAAATTGTTTACTCCTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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