Plant MITE

SE0650005

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10983
Thellungiella halophila
SE0650005
PIF/harbinger
To2
scaffold_7:4736051-4736357
TAA
AGATCATCCACAACCC

Secondary structure and sequence

TSD TIR

5'

3'

TA              C TGATAT   TGT G           AATTT      --            GAGAGAAAGAAAAATAAAA   AACCAGAAAAATTGCTTCCCATAATAAAAAATTAACTCCCTCCAACAACCAATACGCATGTGCCACAT
  AGATCATCCACAAC C      TCA   T GAGTTCATCAG     TTTAAT  AATATTTTTGAT                   CTG                                                                    
  |||||||||||||| |      |||   | |||||||||||     ||||||  ||||||||||||                   |||                                                                    A
  TCTGGTAGGTGTTG G      AGT   G CTCAAGTAGTC     GGGTTG  TTATAAAAACTA                   ACC                                                                    
AA              C --TCAT   --T G           GCCCC      CA            ----AACAAAATTAGTAAA   GAGTGTATGAGCAACTATGGCAGAGTTTTTCTACTCGGCCTGCTTGGACATAGCAGCTCCAAGTTGCC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0650005

TAAGATCATCCACAACCCTGATATTCATGTTGGAGTTCATCAGAATTTTTTAATAATATTTTTGATGAGAGAAAGAAAAATAAAACTGAACCAGAAAAATTGCTTCCCATAATAAAAAATTAACTCCCTCCAACAACCAATACGCATGTGCCACATACCGTTGAACCTCGACGATACAGGTTCGTCCGGCTCATCTTTTTGAGACGGTATCAACGAGTATGTGAGCCAAAATGATTAAAACAAATCAAAAATATTACGTTGGGCCCCGCTGATGAACTCGGTTGATACTGCGTTGTGGATGGTCTAA

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