SE0630008

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10986
  • Thellungiella halophila
  • SE0630008
  • hAT
  • Hat3
  • scaffold_1:17814067-17814496
  • GTCGTATT
  • GTATTCAGAGCCGTGCCT

Secondary structure and sequence

TSD    TIR
5'



3' 
GTC    --              AAGAATTC     C - C  GCAAAAAAAAATAATTTGGCCCCCTTAATCGTTTTTAAAAAAATGTTATAACAAAAAAAAACTAGTTGAATATCAATGCATTTTATATAAAATATGACTATTCTTGCATTTTTAGTAACAAGGTGAATTCTTATTTATAGTGCAGTTACTTTTCTAAATTATTTAGTTTTGTCGATGTG
   GTAT  TCAGAGCCGTGCCT        TCAGG C C AA                                                                                                                                                                                   
   ||||  ||||||||||||||        ||||| | | ||                                                                                                                                                                                    
   TATG  GGTCTCGGCACGGA        TCGTG T C GA                                                                                                                                                                                   
  C    CT              -------C     - C -  TCATTTCGTACACGAAGTCCCGGTTTCTCTTATTTATTTTTAAACCCCGGTTTTAAAAATTTTGACTCAATCGCGTCGACCATAACTCACGCACAAAAGAAGAAGATTATGCGTCCAAGCTTAGGTGTTCCGGAGTAAAGAAAGAAAAAGAAAATTTTTTCAGTCAGAATACCAACAGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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