SE0630009

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10987
  • Thellungiella halophila
  • SE0630009
  • hAT
  • Hat3
  • scaffold_14:3223858-3224163
  • GTTTGAAT
  • GTTTGAATCAGAGTCGTGCCTGAG

Secondary structure and sequence

TSD    TIR
5'



3' 
                        AT    - TAACTACAAGCGAGAAGAAAAAATTGGCCCCTTAAAACTTTTCTTAATGCAGTTTAGCCCACAAATAATTGGCAAAAAGAAGAAGAAAATGACAAATATGCGCTTGGAAAGAATCGAACCCA
GTTTGAATCAGAGTCGTGCCTGAG  TTCT C                                                                                                                          
||||||||||||||||||||||||  |||| |                                                                                                                          G
TAAGTTTGGTCTCGGCACGGACTC  GTGT T                                                                                                                          
                        --    C GATTACTTCGTACACGAAGTCCCGGCTTCTTCAATTTATAAAAAAATCCCGGTTAAAAGATCTCAAACTCAATCAGGTTTATCAAACACTTATCCATTTTCGTACAAACCAATCTCCAAACT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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