SE0650016

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10994
  • Thellungiella halophila
  • SE0650016
  • PIF/harbinger
  • To3
  • scaffold_1:17283459-17283709
  • TTA
  • AGAGCATGTACATCAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                -      --    G  -  --  A  GCA -- GTTTTTGAGACAAAAGAGCTTAATCTTGAAGAGACAGTATCATCCCGACGAACCTGAAGAGACGGTATCATCCCGAAATGA
  AGAGCATGTACATCAG GGGATC  AAGA GG GT  TC TG   C  A                                                                                 
  |||||||||||||||| ||||||  |||| || ||  || ||   |  |                                                                                  
  TCTCGTACATGTAGTC CTTGGG  TTCT CT CC  AG TG   G  T                                                                                 
AT                A      GA    -  T  CA  -  --- TC TATATTATTATAAACAAAAAAGAAAATCAAAAATAAAAAATAAATTAAGCTTTTAATATTAAAAACTGGTTAGTCTTACGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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