Plant MITE

SE0630018

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10996
Thellungiella halophila
SE0630018
hAT
Hat7
scaffold_1:13510122-13510337
GTCCCGAG
GAGCAGTGGCGGAGCTAG

Secondary structure and sequence

TSD TIR

5'

3'

GTCCC  G           CT  AAAAAAACTTTACG   -  T    - TAA -  -   ------- TATATTATAAACAAATTTTACGGGGGTCATTTAACTAAATTATTAATATC
     GA CAGTGGCGGAG  AG              GGG GT AATT T   T TT ATA       A                                                  
     || |||||||||||  ||              ||| || |||| |   | || |||       |                                                  A
     CT GTCACCGCCTC  TC              CCC CC CCCA G   T AA TGG       T                                                  
GAGCC  G           TC  --------GTACAA   T  -    C --- T  C   GTCCACT TAAGTTTAAAAAAAATATTTATAAACATAAAAATTACATTTTTAATCTAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0630018

GTCCCGAGCAGTGGCGGAGCTAGAAAAAAACTTTACGGGGGTTAATTTTAATTTATAATATATTATAAACAAATTTTACGGGGGTCATTTAACTAAATTATTAATATCATATCTAATTTTTACATTAAAAATACAAATATTTATAAAAAAAATTTGAATTTCACCTGGGTCAATTGCACCCCCTCCCAACATGCTCTCTCCGCCACTGGTCCCGAG

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