Plant MITE

SE0650019

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10997
Thellungiella halophila
SE0650019
PIF/harbinger
To7
scaffold_9:8473648-8473921
TTA
AGACCATCTCCATTGC

Secondary structure and sequence

TSD TIR

5'

3'

TT   C          G AAAGATATAT     ----- T     GG     AAGTA    AAAAAAAATAAAAAAGGGAAAAAAACTTATATCTTAGGTTCATAAACTCTTGTGGAAGAACCTTATTTTAGTGAGTATATAA
  AGA CATCTCCATT C          TGGGA     T GTAAG  TTTTT     TTTA                                                                                  
  ||| |||||||||| |          |||||     | |||||  |||||     ||||                                                                                   
  TCT GTAGAGGTAG G          TTCTC     A TTTGT  ACAAA     TTAT                                                                                  
AT   C          G AGTAAGAATA     CAACA -     -A     -----    AATTTAAACTGTAGAATTTTTTTATAATTTGTAACGAATAAAGAGAGACAAAGAGAAAGAAGGTTAATGTACCACGGTACAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0650019

TTAGACCATCTCCATTGCAAAGATATATTGGGATTGTAAGGGTTTTTAAGTATTTAAAAAAAAATAAAAAAGGGAAAAAAACTTATATCTTAGGTTCATAAACTCTTGTGGAAGAACCTTATTTTAGTGAGTATATAACACATGGCACCATGTAATTGGAAGAAAGAGAAACAGAGAGAAATAAGCAATGTTTAATATTTTTTTAAGATGTCAAATTTAATATTAAACAATGTTTAACAACCTCTTATAAGAATGAGGGATGGAGATGCTCTTA

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