SE0650026

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11004
  • Thellungiella halophila
  • SE0650026
  • PIF/harbinger
  • To10
  • scaffold_2:13063600-13063798
  • TAA
  • AGAGCATCTGCAACGCAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                  AAACTCAATTTAAT      TT -- -  TGTTTAATATTAAAAGTGCTACGTGTCCAAGAAGAAACGTTTTTATCAGTCCTCATTTA
  AGAGCATCTGCAACGCAG              CTTTTA  T  A TT                                                           
  ||||||||||||||||||              ||||||  |  | ||                                                           A
  TCTCGTAGGCGTTGCGTC              AAGGTG  T  G AA                                                           
AA                  -------------A      -- TC C  AAATCATTAAAAAAATAATTTTTTTACTTACGTCTTCTCTTTGTCCGACTTCTGCAAAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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