SE0650029

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11007
  • Thellungiella halophila
  • SE0650029
  • PIF/harbinger
  • To12
  • scaffold_16:6258464-6258734
  • TTA
  • AGACCATCTCCAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT   C         CCCT    CAAATTTTACTGCAAAATAGAGTTTGCAGCAAGATTATCTCCAACCCTACTCCAATTCTCACTCCAAAATGGAGTAAAAAATGGAGTTACTCCAAATATGGAGCAAAAAATAG
  AGA CATCTCCAA    ACTC                                                                                                                 
  ||| |||||||||    ||||                                                                                                                 A
  TCT GTAGAGGTT    ATAC                                                                                                                 
AT   C         --AC    TGACGTATAAAAAGAAATAAAACCTCATTGAGGTTTTACCTCAACCCAAAATGAGGTTACATTTGAGGTAAAAAAGGAGGTTTTACCTGAATACTGTTTTTTTTATCTCTTTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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