SE0650030

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11008
  • Thellungiella halophila
  • SE0650030
  • PIF/harbinger
  • To3
  • scaffold_1:17283459-17283709
  • TAA
  • AGAGCATGTACATCAGTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                T AACCCC      AA       ------CCA     TAATAATATTTGTTTTTTCTTTTAGTTTTTATTTTTTATTTAATTCGAAAATTATAATTTTTGACCAATCAGAATG
  AGAGCATGTACATCAG G      TAAGAG  GGGTTCA         GAATA                                                                            
  |||||||||||||||| |      ||||||  |||||||         |||||                                                                             
  TCTCGTACATGTAGTC C      GTTCTC  CCCAAGT         AAAAC                                                                            
AA                - --CCTA      --       ACCGTGTCA     TCTGTTTTCTCGAATTAGAACTTCTCTGTCATAGTAGGGCTGCTTGGACTTCTCTGCCATAGTAGGGCTTTACTTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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