Plant MITE

SE0650031

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11009
Thellungiella halophila
SE0650031
PIF/harbinger
To13
scaffold_14:8952439-8952709
ATG
GGGCCTGTTCGTTAAGTCGCCGCTGCGAC

Secondary structure and sequence

TSD TIR

5'

3'

ATG             AA    C    -     -----------TAA   - TG        AA  A ---------   C GAAGGAAGCAAACTCAACGGAAGTGAAAAGAAATGATGACGCTGCGTTTACTTTGATCGATGTTGAT
   GGGCCTGTTCGTT  GTCG CGCT GCGAC              GTT C  CGGCAATA  AT G         ACA C                                                                   
   |||||||||||||  |||| |||| |||||              ||| |  ||||||||  || |         ||| |                                                                   G
   CCCGGACAAGCAA  TAGC GCGG CGCTG              CTG G  CGCTGTTG  AA G         GTT G                                                                   
GTA             AC    T    T     TGTACTTAAAACCT   C --        --  - TAGATAGCT   - TTGGCAATTTTTGAATTTTTCAACTGGCGTCCTTCAGCGACTAAAAATGTCGCAGGTGGCCGTTGTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0650031

ATGGGGCCTGTTCGTTAAGTCGCCGCTGCGACTAAGTTCTGCGGCAATAAAATAGACACCGAAGGAAGCAAACTCAACGGAAGTGAAAAGAAATGATGACGCTGCGTTTACTTTGATCGATGTTGATGGTGTTGCCGGTGGACGCTGTAAAAATCAGCGACTTCCTGCGGTCAACTTTTTAAGTTTTTAACGGTTGTTGTCGATAGATGAAGTTGTCGCGCGTCTCCAAAATTCATGTGTCGCTGGCGTCGATCAAACGAACAGGCCCATG

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