SE0650033

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11011
  • Thellungiella halophila
  • SE0650033
  • PIF/harbinger
  • To14
  • scaffold_15:699778-700243
  • TTA
  • TAGGGGGGGTTATTGGGAGTTAGATTTATGAAGATTTTAGTTGATTTTA

Secondary structure and sequence

TSD    TIR
5'



3' 
T        -        -     A                ---    ---       ----------AAAA  A      --------   -   AAATTTTAAGAGTTTTATTGGATTTATAAAATTTAGAGAGAGTTCTATGGATTTAAACAATCTATTAAGAATTTTTTAATATGACAGATTTTGAGAATCCAAGGGATATAGGTAGTATTTTGAGAATCATGATTTATAAATTAAATTATAAA
 TAGGGGGG GTTATTGG GAGTT GATTTATGAAGATTTT   AGTT   GATTTTA              TC TGAGAT        TTG TCA                                                                                                                                                        
 |||||||| |||||||| ||||| ||||||||||||||||   ||||   |||||||              || ||||||        ||| |||                                                                                                                                                         
 ATTCCCCC CAATAACC CTCAA CTAAATATTTCTAAAA   TCAA   CTAAGAT              AC CTAAAA        ATT TCT                                                                                                                                                        
         A        T     -                ATC    ATT       ATCAATAACCAAAC  -      ATGTAAGA   A   AAGGAGACAATAAGTAAATCTCTAATATTTTTAGTCAACAATAACTATACTACTAAAAATATTAGATTAATTTTAGGTAACAATAAGTTTTTCAGACGTAAAATTACTAAAATACTAAGACAATATTAGATCACAATAACCGTATTATTAAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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