SE0650039

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11017
  • Thellungiella halophila
  • SE0650039
  • PIF/harbinger
  • To18
  • scaffold_1:16443929-16444473
  • TAA
  • AGAGCATCTCCAATGATGCTCTATTTCTTGCTCTAA

Secondary structure and sequence

TSD    TIR
5'



3'
TA               --AT C       C   -      --------      TTTTTAGAGTAAAATGGTATGCAATGGTACTCTATATGTTGCTCTATAAATAGGGAAATGAACAGTGTTGCTCTATATTTGAAAAAACACTGTTCATGGCTATATTTTTAGAGCAAAAATTTTTTATTTACAAAACAATTCTCTAGTTTTTATATCTTTTTATTTTATACCTACGTAATGAGATAGCTAGTATTATTACACTTAGTTTAAATTATATTATTAA
  AGAGCATCTCCAATG    G TCTATTT TTG CTCTAA        ACTCTA                                                                                                                                                                                                                               
  |||||||||||||||    | ||||||| ||| ||||||        ||||||                                                                                                                                                                                                                               T
  TCTCGTAGAGGTTAC    C AGATAAA AAC GAGATT        AAGAGA                                                                                                                                                                                                                               
AA               CAAT A       -   T      TATATCTC      TTTTTATCTCTTCCCCAAATGAGGTTACCAATAGAGATATAAACTGAGATTTTATTTATTTATTTTATATGATATAAAATAATAAATCATAATTAAAGAATATTCTTGAAAATAAAAATTTTAAAATTTTAACAAGATAGATAAAATAAAAATTGTTATTAAGTTGTACTTGTATAAAAAATTTGTAATTAATAAAAATTCAATTTATTAAAATATTATTCGA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End