Plant MITE

SE0630040

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11018
Thellungiella halophila
SE0630040
hAT
Hat11
scaffold_1:17958471-17959069
CCCAGAGT
TAGGGCTGGGCAC

Secondary structure and sequence

TSD TIR

5'

3'

CCCAGAGT    G        AAT   -          TTCCGTACTCGTT TTTGATCCGTACTTGTCCCGTAAAACTAAGTACTTGTTTTGATCAAGTCGAGTATCAAGTATCTTAAGAAGATTACTTGCAAGTATAAGGCAAATATCAAGTATTAAAAAAAAGTTACTACTTGGTCTTATTGACCCGTTACTCGTTTCAAATCTCTGATTTTTTTTTTAATTTTGTTCCACATCGATTACAACATAAAAAAGGAAAGAAAAGTCTGCTTATCAAAAGATAAATAAGTTGCCAGACTTCAATATC
        TAGG CTGGGCAC   TAC TTGGTACTCG             A                                                                                                                                                                                                                                                               
        |||| ||||||||   ||| ||||||||||             |                                                                                                                                                                                                                                                                
        ATCC GACCCGTG   CTG TCATGAACGG             T                                                                                                                                                                                                                                                               
TGAGACCC    G        -CT   C          ------------- AAAAACCATATGAACTATGAACTGAACGGGGCAAGTTCATAGTTCTATAAACATGAACATGAACTGAACAATTATAGTTCATGAATGTTAAAGTTCATGAACGGTTTAAAAAGTAATGAACGTTCAATGAACCGAACAGGGCAATGAACATTTTCATGTTTGTCTTATGATTTTTTTGATTTTAAAGCCCGGTATAAATCAATTTTGGATACTATTATAAATTATAAAACTGGAAATCCAAAAACCTTTCGAAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0630040

CCCAGAGTTAGGGCTGGGCACAATTACTTGGTACTCGTTCCGTACTCGTTATTTGATCCGTACTTGTCCCGTAAAACTAAGTACTTGTTTTGATCAAGTCGAGTATCAAGTATCTTAAGAAGATTACTTGCAAGTATAAGGCAAATATCAAGTATTAAAAAAAAGTTACTACTTGGTCTTATTGACCCGTTACTCGTTTCAAATCTCTGATTTTTTTTTTAATTTTGTTCCACATCGATTACAACATAAAAAAGGAAAGAAAAGTCTGCTTATCAAAAGATAAATAAGTTGCCAGACTTCAATATCTAAAGCTTTCCAAAAACCTAAAGGTCAAAATATTAAATATTATCATAGGTTTTAACTAAATATGGCCCGAAATTTTAGTTTTTTTAGTATTCTGTTTGTACTTTTACAAGTAACGGGACAAGCCAAGTAACTTGCAAGTAATGAAAAATTTGGCAAGTACTTGAAATTGTAAGTACTTGATATTAACAAGTCAAGTACAAGTACAAATATCTTGATACTTGAACGGGGCAAGTCAAGTATCAAGTATACCAAAAATGGCAAGTACTCGTCTCGTGCCCAGGCCTACCCAGAGT

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