SE0610042

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11020
  • Thellungiella halophila
  • SE0610042
  • Tc1/Mariner
  • St3
  • scaffold_10:6608313-6608576
  • TA
  • TACTCCCTCCGGATTTATTTAGTTGTCGTTTTA

Secondary structure and sequence

TSD    TIR
5'



3' 
           GA   AT               ----------------------AA    --  CACACAAATTAAGAAAATATTAATTGTTTTAGTTTTTCAATATAAAAACATCATTAATTATCTGTTTAAACACAATTCA
TACTCCCTCCG  TTT  TTAGTTGTCGTTTTA                        GTTA  TG                                                                               
|||||||||||  |||  |||||||||||||||                        ||||  ||                                                                                
ATGAGGGAGGC  AAA  AATCAACAGCAAAAT                        CAAC  AA                                                                               
           AA   AT               CTCTTAAAACAAACAAAATTTAAT    AG  AAAGTCAAAAGTTACGTTGTAAATAATCAAAAAATAAAAAATTCTAATAAAAATAATACGTTAAACAAAATAATAACCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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