Plant MITE

SE0630043

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11021
Thellungiella halophila
SE0630043
hAT
Hat7
scaffold_10:1682306-1682519
CCTTTAAT
CAGTGGCGGAGCTAGA

Secondary structure and sequence

TSD TIR

5'

3'

CCTTTAAT           CT   AAAAAAATTTAC      -     ----    TT --  AATGTATTTTAAACAAATTTTACAGGGGTCATTTAGCTAAATTATTAAT
        CAGTGGCGGAG  AGA            GGGGGT TAATT    TTAA  T  AT                                                 
        |||||||||||  |||            |||||| |||||    ||||  |  ||                                                 A
        GTCACCGCCTC  TCT            CCCCCA GTTAA    GTCC  C  TA                                                 
TAATTTCC           --   -CATACAACCCT      C     CTGG    -A TT  AGTTAAAAAAAATATTTATAAACATAAAAATACATTTTCGATCTATATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0630043

CCTTTAATCAGTGGCGGAGCTAGAAAAAAAATTTACGGGGGTTAATTTTAATTTATAATGTATTTTAAACAAATTTTACAGGGGTCATTTAGCTAAATTATTAATATTATATCTAGCTTTTACATAAAAATACAAATATTTATAAAAAAAATTGAATTTCACCTGGGTCAATTGCACCCCCTCCCAACATACTCTCTCCGCCACTGCCTTTAAT

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