Plant MITE

SE0630045

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11023
Thellungiella halophila
SE0630045
hAT
Hat14
scaffold_5:2520217-2520571
AGTGCAAG
TGCAAGCAGTGCCGTGCTTA

Secondary structure and sequence

TSD TIR

5'

3'

AG    AG   T          ----         GG   TAAGGCAAATGACAAAAAAAAATTTCTATTTTGCTCTAATTATTTCTAAAAAAATATAAATTGTAAATCAGATTTAAATATTATTTTATAAGATATTATAAAGTATTAATGCTTTTTATTAATTTATAATAAATTTTCAA
  TGCA  CAG GCCGTGCTTA    GAGTATTAG  GCC                                                                                                                                            
  ||||  ||| ||||||||||    |||||||||  |||                                                                                                                                            C
  ACGT  GTC CGGCACGAAT    TGTTTTTTA  TTC                                                                                                                                            
GA    GA   T          TACT         --   CGTAAACGGAATCCGGGGGAATTATAATTCGTTCAAAATCCCGGAAATTAAAACATAAAAATAAATCATATAACCAACCACAGATTTTTTTTTCTTTTAATCATATAATCAATTATATATAAAAACACAATAAAAAACAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0630045

AGTGCAAGCAGTGCCGTGCTTAGAGTATTAGGGGCCTAAGGCAAATGACAAAAAAAAATTTCTATTTTGCTCTAATTATTTCTAAAAAAATATAAATTGTAAATCAGATTTAAATATTATTTTATAAGATATTATAAAGTATTAATGCTTTTTATTAATTTATAATAAATTTTCAACCACAAAAAATAACACAAAAATATATATTAACTAATATACTAATTTTCTTTTTTTTTAGACACCAACCAATATACTAAATAAAAATACAAAATTAAAGGCCCTAAAACTTGCTTAATATTAAGGGGGCCTAAGGCAAATGCCTTATTTTTTGTTCATTAAGCACGGCTCTGAGTGCAAG

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