SE0630046

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11024
  • Thellungiella halophila
  • SE0630046
  • hAT
  • Hat2
  • scaffold_2:13694091-13694840
  • ATTGACAT
  • ATTAGGGCTGGAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
ATTGAC                       -- T     C ATCCGATCCAGTATCCGATCCTATCCGATCCGCAAAAACTGGATATTCGTGTAGTTTGGATCCGGATCCGGATAGTGAAATTAAGTATTCGGTTATTTCGGATACGGATCCGGATAATATAAAATTTTAAACTCGGATATCCGTTATCCGTTATCCGTTTATTAAGATTTTGAAAATTTTGAAATCTTTGGATATGCATTTAATTTTTTGTTTTAATTATGTTTGAAAATTGTTTTTGGTTTAACTCTTTTACACATGATTGAAATTTATATTGCATGATAATTTTTTTATTTCAGATTGTGAGAGAAGACCATGAAAATAGATAACACAAGAATAT
      ATTAGGGCTGGAATTATTATCCG  G ATCCG T                                                                                                                                                                                                                                                                                                                                                 
      |||||||||||||||||||||||  | ||||| |                                                                                                                                                                                                                                                                                                                                                  
      TAATCCCGACCTTGCCTCGGCCT  A GGCCT G                                                                                                                                                                                                                                                                                                                                                 
TACAGT                       AT -     - AAAAGTTTCATAGGCCTAGGCCGAGGCCTAAACTGCCTATTAGTTAAAATAATAGGCTTAGGCCTAGGCTTTTGAGGCCTATAGGCCTCTGGCTTATAGGCCAAACTTGGTTTCTAAATGCCTATAGGCTGGCCTATAGGCCAAAGCAACTAAATTTTTTTTTTTGAAGTTAAAAATTTTAATATTACTCTATTGTATATATTAATTTTACATAGTAATATCGTTTTTAATGTTTATGGTTTTTAAATTTTCGTAAGTTCATCGTAAGTTTATTGTGTTTCAAATTTTTAAATGTATCGTTTTCTCTTTTATCATTATCTCTTCAATTAAATAGAAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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