Plant MITE

SE0650049

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11027
Thellungiella halophila
SE0650049
PIF/harbinger
To20
scaffold_2:9110379-9111052
TAA
AGAGCATCTCCAAT

Secondary structure and sequence

TSD TIR

5'

3'

TA  A           GTATT    ----------     TTATCTCTAAAATGGAAGAACTGCAAAATGGAGTTGAATTTCTCTCCAATATATTCTTCTATTTTCAACTTCAAAAATAATATTCTAAATATATTCTTCATTTTATATTATTGTTAATTACTAATAATATACTTCATTTATAAAAATTACAAATGAACCCATTTATTTTTTTCACTTAAAACTTCTATAAATTATAATATTATTTTAAATTCAACTATTATAATATGCAAATAATACTACACACCATTTAAAATAATAAAATAAAGTACATTTTAATTTTATGTATTTCTTATGCATTTTTA
  AG GCATCTCCAAT     CCTC          CATTT                                                                                                                                                                                                                                                                                                              
  || |||||||||||     ||||          |||||                                                                                                                                                                                                                                                                                                              A
  TC CGTAGAGGTTG     GGAG          GGTTT                                                                                                                                                                                                                                                                                                              
AA  C           -AGAT    TAAAGAAGGA     ATGATAAAACCACCTTTAAGAAGAGGTTGTGATGAAGTAAAAGTGGACATTTTACCTTCTTACGGTAAAAAAGGAGGTTTATACTTCATTGGGATAAAAGTTGCGGTAAAACGTCCACTTGAAAAAATAAATGTTCTATTAGAAAATGAAAAGTAATTAAGAATTTTGATATAAAAAATAAATATTAAATTAGTAAATATAATATATATAAATTAAATTTTAATTTCTATTTATCTAAATTTTAACTCTTATTTTTTATTTTTTTATATTCTTCTAATTGACTTTGATTTTTATTGTATTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0650049

TAAGAGCATCTCCAATGTATTCCTCCATTTTTATCTCTAAAATGGAAGAACTGCAAAATGGAGTTGAATTTCTCTCCAATATATTCTTCTATTTTCAACTTCAAAAATAATATTCTAAATATATTCTTCATTTTATATTATTGTTAATTACTAATAATATACTTCATTTATAAAAATTACAAATGAACCCATTTATTTTTTTCACTTAAAACTTCTATAAATTATAATATTATTTTAAATTCAACTATTATAATATGCAAATAATACTACACACCATTTAAAATAATAAAATAAAGTACATTTTAATTTTATGTATTTCTTATGCATTTTTAATTTTATGTTATTTTTAGTTTCAGTTAATCTTCTTATATTTTTTTATTTTTTATTCTCAATTTTAAATCTATTTATCTTTAATTTTAAATTAAATATATATAATATAAATGATTAAATTATAAATAAAAAATATAGTTTTAAGAATTAATGAAAAGTAAAAGATTATCTTGTAAATAAAAAAGTTCACCTGCAAAATGGCGTTGAAAATAGGGTTACTTCATATTTGGAGGAAAAAATGGCATTCTTCCATTTTACAGGTGAAAATGAAGTAGTGTTGGAGAAGAATTTCCACCAAAATAGTATTTGGAGGAAGAAATGAGGTAGAGTTGGAGATGCCCTAA

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