SE0630053

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11031
  • Thellungiella halophila
  • SE0630053
  • hAT
  • Hat17
  • scaffold_1:967561-967875
  • TATATATA
  • TATATATACAGAGCCGTGCTTA

Secondary structure and sequence

TSD    TIR
5'



3' 
           A          CAGTGAAATGAAAA    AATTGCCTAATACCACATCTTATTTATTAAGTTTAGAGGTCACATTTAACAAGTGAATTATAGTTTTCTTAGTTGGCTAATTTGTCTTGTGCATATTTTTATTTTGTTCAAATTCAATCC
TATATATACAG GCCGTGCTTA              AGGC                                                                                                                        
||||||||||| ||||||||||              ||||                                                                                                                        T
ATATATATGTC CGGCACGGAT              CTCC                                                                                                                        
           A          ------CCTAAAAC    GGAATCTGATTTTAAATTTACACCAGTAAAATTACTTTAATATATTTTTTAGTCATTAATTTACATGTCATTATAAAAAATTTTTAAACCACTTTTTTATCAATATGAAAATACGCCGAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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