Plant MITE

SE0650055

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11033
Thellungiella halophila
SE0650055
PIF/harbinger
To1
scaffold_16:2893110-2893300
TTA
AGAGCATCCGCAACGCGAGTATTTACTCAAGTCTCTAGCAATTTTTTTAAT

Secondary structure and sequence

TSD TIR

5'

3'

TT             C        TTA  CAA      -AG             TAAAAAATAC      AAAAGAAAATTTGTT            TTAATGG
  AGAGCATCCGCAA GCGAGTAT   CT   GTCTCT   CAATTTTTTTAAT          AAGTAG               GGAAACGTTTCT       
  ||||||||||||| ||||||||   ||   ||||||   |||||||||||||          ||||||               ||||||||||||       T
  TCTCGTAGGCGTT CGTTTATG   GA   CAGAGA   GTTAAAAAAATTA          TTCATC               TCTTTGCAGAGG       
AT             A        TTA  AAC      AGG             -----TAATT      ------------CCT            TAGCCAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0650055

TTAGAGCATCCGCAACGCGAGTATTTACTCAAGTCTCTAGCAATTTTTTTAATTAAAAAATACAAGTAGAAAAGAAAATTTGTTGGAAACGTTTCTTTAATGGTTACCGATGGAGACGTTTCTTCCCTACTTTTAATATTAAAAAAATTGGGAAGAGACCAAAGATTGTATTTGCATTGCGGATGCTCTTA

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