Plant MITE

SE0630057

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11035
Thellungiella halophila
SE0630057
hAT
Hat18
scaffold_7:5737768-5738419
CTTCAACG
GCGGTGCCGGACC

Secondary structure and sequence

TSD TIR

5'

3'

CTTCAAC    TG    A  ---A    ATTTGGATGCCCGCGTCTAACTTTTTAAAATATGCATTTTTATATTTTTTTTTTCAAAATTAAAATAATAATAAAATGAAACAAAAACTTTATAAAACAATCAAACTTCATAAACGGTTTGTAAGAAAAGAAAAAAATCCAATAAAATATATAGTTTTTTGCTGAAATATAGATTTTCTTGCATTTTTCCGTGTAAAATCGTTCATTAAACTGTCGTAGTCGAGTTTTTCAAATATAGCTGTTTCAATTGATAACAAAGATAATCCATTTTTGTGTGTTTCTGGTTATAAAGATAACTAA
       GCGG  CCGG CC    ATCC                                                                                                                                                                                                                                                                                                            
       ||||  |||| ||    ||||                                                                                                                                                                                                                                                                                                             
       CGTC  GGCC GG    CCCG                                                                                                                                                                                                                                                                                                            
GCAACTT    CG    -  AACT    TCCGCTCTCTCCGCTGGCGGCGCCCGTAGATGAGATTTTTCCCGTATAAAAAACGTCGTAGGTGATATTTCCCCATATAAAAAATAAATACGGGGAAATATTTGTTTGAAAACTAGGTATTCTACATAACATAAATATTGGGTTTTTTGGGCTGAGAGTTTGGGTAATCTATTTCCTTTTGGATTTAGATCGGGTTATTCCTTTGGAATGGCACCCCCCGAAGCGGGAGGTGTGGGGGGTTCACTTAGGTGCAGGTGATTACTGGGTAATGTAAGGAGTCGAGCAAAATTATCCCAGAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0630057

CTTCAACGCGGTGCCGGACCAATCCATTTGGATGCCCGCGTCTAACTTTTTAAAATATGCATTTTTATATTTTTTTTTTCAAAATTAAAATAATAATAAAATGAAACAAAAACTTTATAAAACAATCAAACTTCATAAACGGTTTGTAAGAAAAGAAAAAAATCCAATAAAATATATAGTTTTTTGCTGAAATATAGATTTTCTTGCATTTTTCCGTGTAAAATCGTTCATTAAACTGTCGTAGTCGAGTTTTTCAAATATAGCTGTTTCAATTGATAACAAAGATAATCCATTTTTGTGTGTTTCTGGTTATAAAGATAACTAAAAAGACCCTATTAAAACGAGCTGAGGAATGTAATGGGTCATTAGTGGACGTGGATTCACTTGGGGGGTGTGGAGGGCGAAGCCCCCCACGGTAAGGTTTCCTTATTGGGCTAGATTTAGGTTTTCCTTTATCTAATGGGTTTGAGAGTCGGGTTTTTTGGGTTATAAATACAATACATCTTATGGATCAAAAGTTTGTTTATAAAGGGGCATAAATAAAAAATATACCCCTTTATAGTGGATGCTGCAAAAAATATGCCCTTTTTAGAGTAGATGCCCGCGGCGGTCGCCTCTCTCGCCTGCCCTCAAGGCCGGGCCTGCTTCAACG

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