SE0610058

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11036
  • Thellungiella halophila
  • SE0610058
  • Tc1/Mariner
  • St1
  • scaffold_1:13507897-13508139
  • TA
  • TACTCCCTCCGTTTTATAAAGAATGTC

Secondary structure and sequence

TSD    TIR
5'



3' 
                      A    -------------------ATTC   CATTTTTCACACTTATTAAAAAACTATTAAAAATACTATTTTTCCTTTTATTAATGCATTAAATAATTTTTTCTCTAA
TACTCCCTCCGTTTTATAAAGA TGTC                       TGA                                                                              
|||||||||||||||||||||| ||||                       |||                                                                               
ATGAGGGAGGCAAAGTGTTTCT ACAG                       GTG                                                                              
                      C    CAAAATTCCAAAATAAAAACAAA   TTTCTCACCGCAAAATATAAAAGTTACGTCTTAAAATTTGTTATAAGGTCAAAACTGGGATAACTAAATTACATAATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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